gnomAD

10

Integrates with gnomAD (Genome Aggregation Database) through ten specialized tools for querying genomic variant data, population frequencies, gene constraints, transcript analysis, and structural variants across multiple datasets and reference genomes for clinical genetics and population genomics re

Category CLI Tools
Added Mar 28, 2026
Views 55

About

Provides integration with the gnomAD (Genome Aggregation Database) through ten specialized tools for querying genomic variant data via GraphQL API. The implementation offers complete genomic analysis workflow coverage including gene and variant searches, detailed variant information with population frequencies and functional annotations, transcript analysis, regional variant queries, coverage statistics, and structural variant discovery across multiple gnomAD datasets (r2.1, r3, r4) and reference genomes (GRCh37/GRCh38). Features intelligent dataset validation with automatic fallbacks to latest versions, comprehensive constraint scoring including pLI and LOEUF metrics, and support for mitochondrial variants, making it valuable for clinical geneticists analyzing variant pathogenicity, researchers studying population genetics and gene constraint, and bioinformaticians building genomic analysis pipelines that require programmatic access to gnomAD's extensive variant annotation and frequency data.

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